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Links & resources


Useful links


Reviews & Protocols


Press Reviews

Want to get an idea of how the TriM Scope II can be applied in different research areas?
Watch these videos about dynamic processes in living organisms.

Example Neuroscience:
In vivo imaging of GCaMP6f-expressing neurons in the visual cortex (V1) of a conscious, behaving mouse.
The data was kindly provided by Hendrik Backhaus and Albrecht Stroh,
Mainz Animal Imaging Center (MAIC).

  • "Book a Scientist" of the Leibniz Association, Germany (18.8.2020)
Speed dating with science: 
Who decides what I can say online? How smart are our farm animals? And what does ageing do to their metabolism? At "Book a Scientist", Leibniz researchers answer your questions on topics that touch on everyday life.
"Magnetic resonance imaging in neuroscience - an ongoing success story" with Dr. Dirk Cleppien
  • SWR Television's "Odysso - Wissen im SWR:" series - episode "Hauptsache ICH - werden wir immer narzistischer" (25.6.2020)
Lithuanian and German engineers have designed a laser to make brain research cheaper and easier Key research into what causes brain disease and conditions like depression.
  • SWR Television's "Rundum gesund" series - episode "Glücklich und gesund " (13.01.2020)

Software Code availability

See software codes available under 
    https://github.com/Strohlab
or upon request by using the Contact Us button. Please then refer to the specific code you are interested in and indicate the purpose. 

Codes for 2-Photon Microscopy Ca2+ Imaging:
  • ROI Selection tool (Matlab Custom Code, by Zeke Barger) , 
    used in Publications: Ellwardt, Pramanik et al. 2018 
  • Peak detection algorithm of Ca2+ 2-Photon Microscopy Datasets (IGOR Plugin, by Hirofumi Watari) , 
    used in Publications: Ellwardt, Pramanik et al. 2018
Codes for Optic Fiber Ca2+ Measurements:
  • Onset and Offset detection of Slow Ca2+ Waves in Optic Fiber based Datasets (Matlab Custom Code, adapted from Seamari et al. 2007, by Andrea Kronfeld), 
    used in Publications: Schwalm et al. 2017
Codes for fMRI:
  • Find Global Maximum Voxels in F-Maps (Matlab Custom Code, by Hendrik Backhaus) ,
    used in Publications: Schwalm et al. 2017 
  • Create mean hemodynamic response upon stimuli of most active voxels (Matlab Custom Code, by Hendrik Backhaus, used in Publications: Schwalm et al. 2017
  • ROI Selection tool (Matlab Custom Code, by Zeke Barger) , 
    used in Publications: Ellwardt, Pramanik et al. 2018 
  • Peak detection algorithm of Ca2+ 2-Photon Microscopy Datasets (IGOR Plugin, by Hirofumi Watari) , 
    used in Publications: Ellwardt, Pramanik et al. 2018